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A problem-action relation extraction based on causality patterns of clinical events in discharge summaries

  • Jae Wook Seol
  • , Seung Hyeon Jo
  • , Wangjin Yi
  • , Jinwook Choi*
  • , Kyung Soon Lee
  • *Corresponding author for this work
    • Jeonbuk National University
    • Seoul National University

    Research output: Contribution to conferenceConference paperpeer-review

    Abstract

    Medical knowledge extraction has great potential to improve the treatment quality of hospitals. In this paper, we propose a clinical problem-action relation extraction method. It is based on clinical semantic units and event causality patterns in order to present a chronological view of a patient's problem and a physician's action. Based on our observation, a clinical semantic unit is defined as a conceptual medical knowledge for a problem and/or action. Since a clinical event is a basic concept of the problem-action relation, events are detected from clinical texts based on conditional random fields. A clinical semantic unit is segmented from a sentence based on time expressions and inherent structure of events. Then, a clinical semantic unit is classified into a problem and/or action relation based on event causality features in support vector machines. The experimental result on Korean medical collection shows 78.8% in F-measure when given the answer of clinical events. This result shows that the proposed method is effective for extracting clinical problem-action relations.

    Original languageEnglish
    Title of host publicationCIKM 2014 - Proceedings of the 2014 ACM International Conference on Information and Knowledge Management
    PublisherAssociation for Computing Machinery
    Pages1971-1974
    Number of pages4
    ISBN (Electronic)9781450325981
    DOIs
    StatePublished - 2014.11.3
    Event23rd ACM International Conference on Information and Knowledge Management, CIKM 2014 - Shanghai, China
    Duration: 2014.11.32014.11.7

    Publication series

    NameCIKM 2014 - Proceedings of the 2014 ACM International Conference on Information and Knowledge Management

    Conference

    Conference23rd ACM International Conference on Information and Knowledge Management, CIKM 2014
    Country/TerritoryChina
    CityShanghai
    Period14.11.314.11.7

    Keywords

    • Causal relationship
    • Clinical semantic unit
    • Problem-action relation
    • Relation extraction

    Quacquarelli Symonds(QS) Subject Topics

    • Computer Science & Information Systems
    • Data Science

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