Characterization of a novel dsRNA mycovirus of Trichoderma atroviride NFCF028

Song Hee Lee; Suk Hyun Yun; Jeesun Chun; Dae Hyuk Kim

doi:10.1007/s00705-016-3214-z

Characterization of a novel dsRNA mycovirus of Trichoderma atroviride NFCF028

Song Hee Lee
, Suk Hyun Yun
, Jeesun Chun
, Dae Hyuk Kim^*

^*Corresponding author for this work

Department of Molecular Biology

Jeonbuk National University

Research output: Contribution to journal › Journal article › peer-review

26 Scopus citations

Abstract

Molecular characterization of the most common dsRNA element from Trichoderma atroviride indicated that it comprised 8,566 bp and encoded two large open reading frames (ORF1 and 2). The two ORFs were found to overlap by 46 bp with a typical (−1) slippery heptanucelotide sequence. The deduced protein sequences of ORF1 and ORF2 showed significant similarities to those of known mycoviral structural proteins and RNA-dependent RNA polymerases, respectively. Phylogenetic analysis indicated that this dsRNA is a member of a distinct species related to a group of unclassified mycoviruses; therefore, it was named Trichoderma atroviride mycovirus 1 (TaMV1).

Original language	English
Pages (from-to)	1073-1077
Number of pages	5
Journal	Archives of Virology
Volume	162
Issue number	4
DOIs	https://doi.org/10.1007/s00705-016-3214-z
State	Published - 2017.04.1

Keywords

Lentinula edodes
Mycovirus
Shiitake
Trichoderma atroviride

Quacquarelli Symonds(QS) Subject Topics

Biological Sciences

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10.1007/s00705-016-3214-z

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title = "Characterization of a novel dsRNA mycovirus of Trichoderma atroviride NFCF028",

abstract = "Molecular characterization of the most common dsRNA element from Trichoderma atroviride indicated that it comprised 8,566 bp and encoded two large open reading frames (ORF1 and 2). The two ORFs were found to overlap by 46 bp with a typical (−1) slippery heptanucelotide sequence. The deduced protein sequences of ORF1 and ORF2 showed significant similarities to those of known mycoviral structural proteins and RNA-dependent RNA polymerases, respectively. Phylogenetic analysis indicated that this dsRNA is a member of a distinct species related to a group of unclassified mycoviruses; therefore, it was named Trichoderma atroviride mycovirus 1 (TaMV1).",

keywords = "Lentinula edodes, Mycovirus, Shiitake, Trichoderma atroviride",

author = "Lee, \{Song Hee\} and Yun, \{Suk Hyun\} and Jeesun Chun and Kim, \{Dae Hyuk\}",

note = "Publisher Copyright: {\textcopyright} 2017, Springer-Verlag Wien.",

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day = "1",

doi = "10.1007/s00705-016-3214-z",

language = "English",

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pages = "1073--1077",

journal = "Archives of Virology",

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TY - JOUR

T1 - Characterization of a novel dsRNA mycovirus of Trichoderma atroviride NFCF028

AU - Lee, Song Hee

AU - Yun, Suk Hyun

AU - Chun, Jeesun

AU - Kim, Dae Hyuk

PY - 2017/4/1

Y1 - 2017/4/1

N2 - Molecular characterization of the most common dsRNA element from Trichoderma atroviride indicated that it comprised 8,566 bp and encoded two large open reading frames (ORF1 and 2). The two ORFs were found to overlap by 46 bp with a typical (−1) slippery heptanucelotide sequence. The deduced protein sequences of ORF1 and ORF2 showed significant similarities to those of known mycoviral structural proteins and RNA-dependent RNA polymerases, respectively. Phylogenetic analysis indicated that this dsRNA is a member of a distinct species related to a group of unclassified mycoviruses; therefore, it was named Trichoderma atroviride mycovirus 1 (TaMV1).

AB - Molecular characterization of the most common dsRNA element from Trichoderma atroviride indicated that it comprised 8,566 bp and encoded two large open reading frames (ORF1 and 2). The two ORFs were found to overlap by 46 bp with a typical (−1) slippery heptanucelotide sequence. The deduced protein sequences of ORF1 and ORF2 showed significant similarities to those of known mycoviral structural proteins and RNA-dependent RNA polymerases, respectively. Phylogenetic analysis indicated that this dsRNA is a member of a distinct species related to a group of unclassified mycoviruses; therefore, it was named Trichoderma atroviride mycovirus 1 (TaMV1).

KW - Lentinula edodes

KW - Mycovirus

KW - Shiitake

KW - Trichoderma atroviride

UR - https://www.scopus.com/pages/publications/85008222862

U2 - 10.1007/s00705-016-3214-z

DO - 10.1007/s00705-016-3214-z

M3 - Journal article

C2 - 28050736

AN - SCOPUS:85008222862

SN - 0304-8608

VL - 162

SP - 1073

EP - 1077

JO - Archives of Virology

JF - Archives of Virology

IS - 4

ER -

Characterization of a novel dsRNA mycovirus of Trichoderma atroviride NFCF028

Abstract

Keywords

Quacquarelli Symonds(QS) Subject Topics

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